Comments / complaints / bugs / and especially praise welcomed. -- mike a
CleaveLand 3 has now been completed and is ready for use. It is substantially different than both CleaveLand 1 (Described by Addo-Quaye et al. (2009) in bioinformatics, as well as CleaveLand2. It runs much faster, no longer uses extensive random queries, and has a sound statistical footing to assess the likelihood of a hit occurring by random chance, taking into account both the quality of the small RNA / mRNA alignment and the noise in the degradome library being analyzed.
Comments / complaints / bugs / and especially praise welcomed. -- mike a
FANG CHAO
9/14/2011 12:31:45 pm
Hello! I'm a MS student who studying in Inha Univerisity, Korea.I want to install Cleaveland 3,but it seems can't install correctly and I don't know how to run Cleaveland 3. Can you send some materials like README file?
mike axtell
9/14/2011 10:01:55 pm
Hi Fang, thanks for your comments. There is actually a README .pdf file within the CleaveLand 3 tarball. Just download the tarball, unpack and decompress [ for instance, tar -zxvf cleaveland3-0-3.tgz ], and then check out the README for instructions. -- mike axtell
FANG CHAO
9/27/2011 12:23:58 pm
Hi mike axtell, I'm Fang Chao,thanks for your reply last time.I followed README file and already trying to run CleaveLand3, but I still met some problems in workflow 4-using script'Cleaveland3_map2dd.pl', can you send me some sample data about 'map_data_file' and 'txome_FASTA_file'? I'm a beginner of CleaveLand..You can email me to [email protected]. I'll really appreciate it.
Mike Axtell
9/27/2011 11:23:19 pm
Hi Fang. The 'txome_FASTA_file' is simply the fasta-formatted dataset that your reads were mapped to -- most often a complete transcriptome. It should look like
Brain An
10/17/2011 10:02:53 pm
Hi Mike Axetell
Mike Axtell
10/17/2011 11:28:52 pm
@ Brain
Fenglong Sun
10/31/2011 11:34:32 pm
Zhang wei
11/4/2011 11:57:15 am
Hello, Mr Axtell!
Brian An
12/8/2011 05:40:37 pm
Hi Dr. Axtell Comments are closed.
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